Package: kwbGompitz 0.8.0

Hauke Sonnenberg

kwbGompitz: Interface to GompitZ Tool for Modelling the Degradation of Sewer Pipelines

Functions enabling the writing of GompitZ input files, running of GompitZ Tools (gompcal.exe, gompred.exe) and reading of GompitZ output files.

Authors:Hauke Sonnenberg [aut, cre], Michael Rustler [ctb], SEMA [fnd], Kompetenzzentrum Wasser Berlin gGmbH [cph]

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kwbGompitz.pdf |kwbGompitz.html✨
kwbGompitz/json (API)
NEWS

# Install 'kwbGompitz' in R:

install.packages('kwbGompitz', repos = c('https://kwb-r.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kwb-r/kwbgompitz/issues

Uses libs:

c++– GNU Standard C++ Library v3

On CRAN:

modelling project-sema sewer-classification cpp

1.70 score 1 scripts 37 exports 34 dependencies

Last updated 3 years agofrom:dac7a197fc. Checks:8 ERROR, 3 WARNING. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	FAIL	Feb 10 2025
R-4.5-win-x86_64	WARNING	Feb 10 2025
R-4.5-mac-x86_64	ERROR	Feb 10 2025
R-4.5-mac-aarch64	ERROR	Feb 10 2025
R-4.5-linux-x86_64	ERROR	Feb 10 2025
R-4.4-win-x86_64	WARNING	Feb 10 2025
R-4.4-mac-x86_64	ERROR	Feb 10 2025
R-4.4-mac-aarch64	ERROR	Feb 10 2025
R-4.3-win-x86_64	WARNING	Feb 10 2025
R-4.3-mac-x86_64	ERROR	Feb 10 2025
R-4.3-mac-aarch64	ERROR	Feb 10 2025

Exports:.runModuleInDirectory catHeader catStructure checkConvergence checkInputData composeGompitzInputData copyParameters createExampleFiles createExampleFilesSmall createStatusMatrix default_condition_colours demo_survival exampleCalibration exampleFile get_label get_survivals gg_stacked_bars interpolate_between marginal_survival plot_pipe_conditions plot_prediction_by_pipe plot_stacked_bars plot_survival_curves printConvergence readCalibration readPredictionFile readPredictionFileWithDataTable runGompitzCalibration runGompitzPrediction runGompredInDirectory standard_survival summary_generic_sim survivals survivals_original test_marginal_survival to_theme_legend underline

Dependencies:cli colorspace data.table fansi farver ggplot2 glue gridExtra gtable isoband kwb.plot kwb.utils labeling lattice lifecycle magrittr manipulate MASS Matrix mgcv munsell nlme pillar pkgconfig R6 RColorBrewer Rcpp rlang scales tibble utf8 vctrs viridisLite withr

Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Check for Convergence in Calibration	.calibrationAvailable
Content for Strategy File 0	.fileContentStrategy0
Content for Strategy File 1	.fileContentStrategy1
File Content for Strategy 1 or 2	.fileContentStrategy1or2
Content for Strategy File 2	.fileContentStrategy2
Content for Strategy File 3	.fileContentStrategy3
Number of observations	.getObservationByCondition
probability order 2	.orderByWeightedProbabilities
.runModuleInDirectory	.runModuleInDirectory
Append assignment "a=b"	addAssignment
Print an underlined Header	catHeader
Print the Structure of an Object	catStructure
Bind Columns from a list of Data Frames	cbindDataFrames
Warn if Model did not converge for all Strata	checkConvergence
Check Input Data	checkInputData
Apply a Function for each Column	columnwise
Compare Estimates in calib.txt and param.txt	compareEstimates
Compose Input Data for Gompitz Functions	composeGompitzInputData
Prepare "Master Data" for Gompitz Functions	composeMasterData
Copy Model Parameters from one Stratum to another	copyParameters
Create Example Files	createExampleFiles
Create smaller versions of the example files	createExampleFilesSmall
Default Covariate Status Matrix	createStatusMatrix
Get default Vector of Condition Colours	default_condition_colours
Interactive Plot of Survival Curves	demo_survival
Calibration Object of the Gompitz Example	exampleCalibration
Get Path to Example File	exampleFile
Provide Label for Plot in selected Language	get_label
Create target directory if required and return the path to it	get_or_create_target_dir
Get Survival Curves from a Calibration Object	get_survivals
Get a full Calibration Object from File	getCalibration
Source File of Calibration Result	getCalibrationFile
Get parameters from Calibration Object	getCalibrationParameters
Gompitz Covariate Status Constants	getConstants
Default Paths to GompitZ Files	getDefaultPaths
Example Covariate Status Matrix	getExampleStatusMatrix
Get file Content for Input File	getFileContentForInputFile
Random Observation Data	getSampleObservations
Read Strata Labels from Observation File	getStataLabels
Generate gg-plot of stacked Bars	gg_stacked_bars
Calibration Input File Body	inputFileBody
Calibration Input File Header	inputFileHeader
Interpolate equidistantly between End Points	interpolate_between
Condition state marginal survival function surv(j,t,theta,Z)	marginal_survival
Convert Data in wide View to long View	matrixToLongDataFrame
Call a Function with all Combinations of Argument Ranges	multicall
Plot several Survival Curves	multiplot_survival
Generate text lines for param.txt	parameterLines
Plot multiple Survival Curves	parameterplot
Plot the Pipe Conditions over Time	plot_pipe_conditions
Plot Condition Probabilities by Pipe	plot_prediction_by_pipe
Generate gg-plot of Stacked Bars	plot_stacked_bars
Plot Survival Curves	plot_survival_curves
Plot Calibration Result	plotCalibration1
Plot Calibration Result (2)	plotCalibration2
Plot the Result of a Prediction	plotPrediction
Plot Prediction by Year to temp. PDF File	plotPredictionByYear
Plot Prediction for the given Year	plotPredictionForYear
Prepare data for plot_stacked_bars()	prepare_for_gg_stacked_bars
Print the Calibration for one Stratum	print.gompitz_stratum_calib
Print a GompitZ Calibration Structure	print.gompitz.calibration
Print the Convergence Information	printConvergence
Read Calibration Result	readCalibration
Read Observation Data from File in GompitZ-Format	readObservations
Read Parameters from "param.txt"	readParameters
Read Prediction Result File	readPredictionFile
Run Calibration Example	runGompcalExample
Run gompcal.exe in given Directory	runGompcalInDirectory
Perform GompitZ Calibration	runGompitzCalibration
Run Gompitz Predicion	runGompitzPrediction
Run gompred.exe in given Directory	runGompredInDirectory
Span a Vector around x if Condition is met	spanIf
Mathematical Constant 'sqrt(2 * pi)'	SQRT_2_PI
Weibull condition state survival function	standard_survival
Content for Strategy File	strategyFileContent
Aggregate simulated Condition Classes	summary_generic_sim
Get Values of (Standard or Marginal) Survival Curves	survivals
Get Values of (Standard or Marginal) Survival Curves	survivals_original
Create temporary gompitz directory	tempGompitzDir
Test Marginal Survival	test_marginal_survival
Generate ggplot Theme for Legend	to_theme_legend
Convert Text Lines to Status Matrix	toStatusMatrix
Create a String to be used as an Underline	underline
Write the Input File	writeInputFile
Write Calibration Parameters to File	writeParameters